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* http://reflect.ws/ | * http://reflect.ws/ | ||
** '''Reflect Dictionary:''' The core component of Reflect is a consolidated dictionary that links names and synonyms to source data entries. It was created by merging the STRING (http://string.embl.de) and STITCH (http://stitch.embl.de) databases, and it currently contains over 1.5 million proteins from 373 organisms and 4.3 million small molecules. The entire 18 GB dictionary is kept in RAM to enable fast tagging. | ** '''Reflect Dictionary:''' The core component of Reflect is a consolidated dictionary that links names and synonyms to source data entries. It was created by merging the STRING (http://string.embl.de) and STITCH (http://stitch.embl.de) databases, and it currently contains over 1.5 million proteins from 373 organisms and 4.3 million small molecules. The entire 18 GB dictionary is kept in RAM to enable fast tagging. | ||
** '''Benchmarks | ** '''Benchmarks</B> Reflect's named entity recognition has been evaluated against the BioCreative I corpus for Saccharomyces cerevisiae and Drosophila melanogaster and achieved an F-score of 91% and 66% respectively (Pafilis et al. submitted). | ||
*http://www.elseviergrandchallenge.com/team1.html | *http://www.elseviergrandchallenge.com/team1.html | ||
** Most of us interested in the life sciences regularly comes across names of genes, proteins, or small molecules that we would like to know more about. To make this process easier, our team at the European Molecular Biology Laboratory have developed a new, free service called Reflect (http://reflect.ws) that can be installed as a plug-in to Firefox or Internet Explorer. | ** Most of us interested in the life sciences regularly comes across names of genes, proteins, or small molecules that we would like to know more about. To make this process easier, our team at the European Molecular Biology Laboratory have developed a new, free service called Reflect (http://reflect.ws) that can be installed as a plug-in to Firefox or Internet Explorer. |