PPLRE SprotProteinName Table
- The PPLRE SprotProteinName Table is a PPLRE SwissProt Table that contains the protein names associatedto each ProteinPA (Primary
Accession) number.
Summary Statistics
- Records: 106,986
AttributeDescriptions
|
Attribute Name |
Description |
|
SprotID |
|
|
ProteinPA |
Foreign key to SprotProteinProkaryote |
|
ProteinName |
One or more names that the Protein is known by. Multiple values are separated by semicolons. |
Sources
- NCBIOrganismProkaryote() to restrict it to our organism pool
- SwissProtProtein(215, 742 rows) from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.dat.gz
Uses
- Populate the PPLRE Protein Table.
Example
|
UniprotEntryName |
ELAS_PSEAE |
BLAC_STAAU |
GSHR_PSEAE |
CSG_METFE |
SECG_METJA |
|
ProteinPA |
P14756 |
P00807 |
P23189 |
P27373 |
P60460 |
|
ProteinName |
Pseudolysin
precursor (EC 3.4.24.26) (Elastase) (Neutral metalloproteinase) |
Beta-lactamase
precursor (EC 3.5.2.6) (Penicillinase) |
Glutathione reductase (EC 1.8.1.7) (GR) (GRase) |
Cell surface glycoprotein precursor (S-layer protein) |
Preprotein translocase secG subunit (Protein transport protein SEC61beta subunit homolog) |
Example 2
% head ./data/ontology/v1.2/SprotProteinName.tab
- ProteinNameID ProteinName Count AsAnOfficialName AsASynonym
0 Putative 1-aminocyclopropane-1-carboxylate deaminase 1 1 0
1 ACC deaminase 1 0 1
2 Putative 3-methyladenine DNA glycosylase 1 1 0
3 aspartate aminotransferase 1 1 1 0
4 Transaminase A 1 0 1
5 ASPAT 1 0 1
6 aspartate aminotransferase 2 1 1 0
7 Aspartate aminotransferase 1 1 0
8 AspAT 1 0 1