- (Hirschman et al., 2004) ⇒ Lynette Hirschman, Marc E. Colosimo, Alexander Yeh, Alexander Morgan, Christian Blaschke, Alfonso Valencia. (2004). “Report on the 2004 BioCreAtIvE Workshop." Presentation.
Subject Headings: BioCreAtIvE Benchmark Task
- Focus on tasks relevant to biologists:
- Task 1: Gene name extraction and normalization
- Identification of gene names in PubMed abstracts & normalization to unique gene IDs
- Identify all mentions of genes, proteins, etc in sentences from PubMed abstracts
- For yeast, fly, and mouse.
- For each abstract, return unique gene IDs mentioned in the abstract
- Task 2: Functional annotation
- Identification of textual evidence and GO codes, for a given protein, in full text articles
- Return a supporting passage for Protein/GO codes
- Task 2.1: Given protein, GO code and paper
- 1076 Protein/GO code combinations in test set
- Task 2.2: Similar but had to generate GO code as well
- 145 Protein/Paper pairs with 1211 GO terms
Facts about "2004 ReportOnBioCreative2004Workshop"
|Author||Lynette Hirschman +, Marc E. Colosimo +, Alexander Yeh +, Alexander Morgan +, Christian Blaschke + and Alfonso Valencia +|
|title||Report on the 2004 BioCreAtIvE Workshop +|
|titleUrl||http://biocurator.org/meetings/eugene/15 BioCreative Colosimo.ppt +|