PPLRE Manual Evaluation System

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This section of the PPLRE Detailed Application Design documentation describes the PPLRE Manual Evaluation System.

Overview

The PPLRE Manual Evaluation System is the System used in the PPLRE Project by Domain Experts to evaluate a predicted OPL() relation in a Passage.

System Requirements

System Requirements v1.1

  • LocalizationID
    • Present a the read-only integer that uniquely identifies the prediction


  • ReferenceIDs
    • Present the PSID (integer, read-only)
    • Present the PMID, if available (integer, read-only)
    • Present the PMCID, if available (integer, read-only)


  • Passage

o Present a text “Passage” (~256 characters, read-only) o Associate a “Valid”, an “Invalid”, and a “Maybe” checkbox.

  • Organism

o Present the name of an “Organism” (~25 characters, read-only)

o Associate a “Valid” and an “Invalid” checkbox.

- Location

o Present the name of a “Location” (~25 characters, read-only)

o Associate a “Valid” and an “Invalid” checkbox.

- Protein(s)

o Present the name of one or more names (~25 characters, read-only)

o Associate a “ValidProtein1”, “ValidProtein2”, and a “NotPreotinName” checkbox beside each name.

- Reviewer

o Ability for the reviewer to select themselves from a pull-down menu


System Requirements v2.0

- LocalizationID

o Present a the read-only integer that uniquely identifies the prediction

- ReferenceIDs

o Present the PSID (integer, read-only)

o Present the PMID, if available (integer, read-only)

o Present the PMCID, if available (integer, read-only)

- Passage

o Present a text “Passage” (~256 characters, read-only)

o Associate a “Valid”, an “Invalid”, and a “Maybe” checkbox.

o Associate a “Primary” vs. “Secondary” checkbox (new)

- Organism

o Present the name of an “Organism”

§ ~25 characters visible

§ read-only

§ associated to the organism’s NCBI scientific name (new)

o Associate a “Valid” and an “Invalid” checkbox.

- Location

o Present the name of a “Location”

§ ~25 characters visible

§ read-only

§ associated to the primary Gene Ontology name for the cell component (new)

o Associate a “Valid” and an “Invalid” checkbox.

- Protein(s)

o Present the name of one or more names (~25 characters, read-only)

o Associate a “ValidProtein1”, “ValidProtein2”, and a “NotProteinName” checkbox beside each name.

- Reviewer

o Ability for the reviewer to select themselves from a pull-down menu

- Candidate for ePSORTdb (new)

o Ability for the reviewer to state whether this is a strong candidate for entry into ePSORTdb

o Ideally would be automatically selected if all “Valid” checkboxes are selected.


Future Versions

  • Already in ePSORTdb
    • Ability for the reviewer to select themselves from a pull-down menu