PPLRE Structured Data
Jump to navigation
Jump to search
This section of PPLRE Detailed Design document is meant to describe the Persistent Data that will be used during the PPLRE Project. For data in Relational Table format, the Metadata, sources and sample data are provided.
Overview
- Some of the values in the sample data provided are also presented with the meaning of the value in parentheses. E.g. an entrysuch as: 287(P. auregionosa)suggests that value 287 corresponds to P. aureginosa in another table – typically through a foreignkey relationship to a source table.
- Some information has still not been transfered over from: http://koch.pathogenomics.ca/pplre/PPLRE_5.1_DetailedDataDesign.html
Derived Ontology Tables
- PPLRE OrganismProteinLocalization Table.
- PPLRE Organism Table.
- PPLRE OrganismName Table.
- PPLRE OrganismDomain Table.
- PPLRE OrganismPhylum Table.
- PPLRE OrganismClass Table.
- PPLRE Protein Table.
- PPLRE ProteinSynonym Table.
- PPLRE GeneName Table.
- PPLRE Location Table.
- PPLRE LocationSynonym Table.
- PPLRE TextRegion Table.
- PPLRE OrganismProteinsLocationArchaea Table.
- PPLRE OrganismProteinsLocationPseudomona Table
ePSORTdb Tables
SwissProt (Sprot) Protein Tables
- PPLRE SprotProteinAccession Table.
- PPLRE SprotProteinGene Table.
- PPLRE SprotProteinLocalization Table.
- PPLRE SprotProteinLocus Table.
- PPLRE SprotProteinName Table.
- PPLRE SprotProteinProkaryote Table.
- PPLRE SprotProteinProteinName Table.
- PPLRE SprotProteinPubmed Table
NCBI Tables
UMLS Tables
- PPLRE UmlsOrganismName Table.
- PPLRE UmlsProteinName Table.
- PPLRE UmlsGeneName Table.
- PPLRE UmlsDataSource Table
Miscellaneous Tables
Patterns Tables
- PatternsPositiveManual Data ==
- PatternsNegativeManual Data ==
.
- PPLRE ReferenceDocuments Table (corpus?)
TestDocuments Files
.
- PplrePseaeProteinNameTable]]
BLAST Tables
- BlastProtein Table ==