PPLRE LocationSynonym Table

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Attribute Descriptions

ATTRIBUTE NAME
DESCRIPTION
LocationNameID The primary key.
LocationSynonym A name that has been used in the literature to identify the localization of a protein on a Prokaryote’s cell.
LocationID The foreign key to the PPLRE Location Table.
Comment Commentary on the usage of the synonym.


Statistics

  • Records: 88

Source

  • createSprotTables.pl Uniprot_Sprot_Prokaryote.dat

Uses


Notes

  • Some names will ambigiously refer to several localizations. Some commentary is likely given as when a certain sense is implied.
  • The mapping of names that refer to which localization is in the LocalizationLocalizationName table.

Example

  1. LocationNameID LocationName LocationID Comment

1 cytoplasmic GO0005737 2 cytoplasmic membrane GO0005886 3 periplasmic GO0030288 4 outer membrane GO0009279 5 cell wall GO0005618 "May also refer to the more specific type of localization GO0009275, but the decision requires context (the type of organism)." 6 extracellular GO0005576 7 flagellar GO0009288 8 fimbrium GO0009289 ... 806 pili GO0009289 807 pilin GO0009289 A subunit of the pilus/fimbrium 808 pilins GO0009289 900 gas vesicle membrane GO0031411 901 vacuole GO0031411 1001 host cytoplasm GO0030430 1101 capsule GO0042603 1201 cellular chromatophore membrane GO0042717 1301 spore core GO0042763 1302 forespore GO0042763